PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70535.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TCP
Protein Properties Length: 124aa    MW: 14613.5 Da    PI: 12.0488
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70535.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.24.4e-3231243129
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.kaaksaakskks 100
                 +kkdrhsk+ T +g+RdRR+Rls+++aa+fF Lqd LGf ++s t++WL++ +  ai +l +++ +++    +++ ss  ++++++ +aa++aa + ++
  EPS70535.1   3 KKKDRHSKVNTLRGPRDRRMRLSVDVAAKFFRLQDLLGFHRPSATLDWLIKTSADAIGDLQRQQEQQQ----PSRLSSPIGKEEEEeQAAAAAAVEGRR 97 
                 79*************************************************************44444....223333333333331334444455555 PP

         TCP 101 qksaasalnlakesrakarararertrek 129
                 +++    + + +esr++ar+rarert++k
  EPS70535.1  98 RRRRR--RWVGRESRERARERARERTSQK 124
                 55555..89999**************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-283124IPR005333Transcription factor, TCP
PROSITE profilePS5136928.387462IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.284107124IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
KKKKKDRHSK VNTLRGPRDR RMRLSVDVAA KFFRLQDLLG FHRPSATLDW LIKTSADAIG  60
DLQRQQEQQQ PSRLSSPIGK EEEEEQAAAA AAVEGRRRRR RRRWVGRESR ERARERARER  120
TSQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRRRRRRR
296102RRRRRRR
3109119RERARERARER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8CUR82e-82S8CUR8_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc03g119770.2.13e-23(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-18TCP domain protein 12
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]